Filip Malmberg
Senior Lecturer/Associate Professor at Department of Information Technology; Vi3; Image Analysis
- Telephone:
- +46 18 471 53 08
- E-mail:
- filip.malmberg@it.uu.se
- Visiting address:
- Hus 10, Lägerhyddsvägen 1
- Postal address:
- Box 337
751 05 UPPSALA
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Short presentation
Filip Malmberg is a researcher in computerized image analysis, working at the Department of Information Technology.
Publications
Recent publications
- Cell Segmentation of in situ Transcriptomics Data using Signed Graph Partitioning (2023)
- A whole-body diffusion MRI normal atlas (2023)
- Genetics of liver fat and volume associate with altered metabolism and whole body magnetic resonance imaging (2022)
- Guest Editorial (2022)
- Improved geometric accuracy of whole body diffusion-weighted imaging at 1.5T and 3T using reverse polarity gradients (2022)
All publications
Articles
- A whole-body diffusion MRI normal atlas (2023)
- Genetics of liver fat and volume associate with altered metabolism and whole body magnetic resonance imaging (2022)
- Guest Editorial (2022)
- Improved geometric accuracy of whole body diffusion-weighted imaging at 1.5T and 3T using reverse polarity gradients (2022)
- White matter changes should not exclude patients with idiopathic normal pressure hydrocephalus from shunt surgery (2022)
- Faster dense deformable image registration by utilizing both CPU and GPU (2021)
- Multiple comparison correction methods for whole-body magnetic resonance imaging (2020)
- Fast graph-cut based optimization for practical dense deformable registration of volume images (2020)
- Validation of automated whole-body analysis of metabolic and morphological parameters from an integrated FDG-PET/MRI acquisition (2020)
- Two Polynomial Time Graph Labeling Algorithms Optimizing Max-Norm-Based Objective Functions (2020)
- RayCaching (2020)
- PDNet (2019)
- CalligraphyNet: Augmenting handwriting generation with quill based stroke width (2019)
- Average volume reference space for large scale registration of whole-body magnetic resonance images (2019)
- A strategy for OCT estimation of the optic nerve head pigment epithelium central limit-inner limit of the retina minimal distance, PIMD-2π (2019)
- A whole-body FDG PET/MR atlas for multiparametric voxel-based analysis (2019)
- Imiomics Using Whole-body FDG PET/MR in Staging and Treatment Response Evaluation of Non-Hodgkin Lymphoma Patients Treated With CAR-T Cells (2018)
- Registration-based automated lesion detection and therapy evaluation of tumors in whole body PET-MR images (2017)
- Exact Evaluation of Targeted Stochastic Watershed Cuts (2017)
- SmartPaint (2017)
- Using anti-aliased signed distance fields for generating surgical guides and plates from CT images (2017)
- A concept for holistic whole body MRI data analysis, Imiomics (2017)
- Comparison of 2D radiography and a semi-automatic CT-based 3D method for measuring change in dorsal angulation over time in distal radius fractures (2016)
- An OCT variable for glaucoma follow-up (2016)
- Intracranial volume normalization methods (2015)
- BoneSplit - A 3D Texture Painting Tool for Interactive Bone Separation in CT Images (2015)
- Efficient algorithm for finding the exact minimum barrier distance (2014)
- Canine body composition quantification using 3 tesla fat–water MRI (2014)
- Evaluation of prostate segmentation algorithms for MRI (2014)
- An efficient algorithm for exact evaluation of stochastic watersheds (2014)
- Shape and volume of craniofacial cavities in intentional skull deformations (2013)
- Intracranial volume estimated with commonly used methods could introduce bias in studies including brain volume measurements (2013)
- Bisphenol A exposure increases liver fat in juvenile fructose-fed Fischer 344 rats (2013)
- Quantification of total and visceral adipose tissue in fructose-fed rats using water-fat separated single echo MRI (2013)
- The minimum barrier distance (2013)
- A Graph-based Framework for Sub-pixel Image Segmentation (2011)
- Measurement of fibre–fibre contact in three-dimensional images of fibrous materials obtained from X-ray synchrotron microtomography (2011)
- Role of fibre–fibre and fibre–matrix adhesion in stress transfer in composites made from resin-impregnated paper sheets (2009)
- Läkarens känsel hjälper datorn (2009)
- A toolkit for interactive medical image visualization and segmentation with haptics (2008)
- Points2Regions
- Deformable Image Registration of Volumetric Whole-body MRI: An Evaluation
- Faster dense deformable image registration by utilizing both CPU and GPU
- Vectorised High-Fidelity Haptic Rendering with Dynamic Pointshell
- Rapid and Precise Orbit Segmentation through Interactive 3D Painting
- Genetic Variation and Sex-Stratified Advanced Body Composition Analysis
Books
- Discrete Geometry and Mathematical Morphology (2021)
- Visual Saliency (2019)
- Graph-based Methods for Interactive Image Segmentation (2011)
- Segmentation and Analysis of Volume Images, with Applications (2008)
Conferences
- Cell Segmentation of in situ Transcriptomics Data using Signed Graph Partitioning (2023)
- Optimization of max-norm objective functions in image processing and computer vision (2019)
- SoftCut: (2018)
- When Can lp-norm Objective Functions Be Minimized via Graph Cuts? (2018)
- The Boolean Map Distance (2017)
- BoneSplit – A 3D painting tool for interactive bone segmentation in CT images (2017)
- The Minimum Barrier Distance (2017)
- Further analysis of clinical feasibility of OCT-based glaucoma diagnosis with Pigment epithelium central limit–Inner limit of the retina Minimal Distance (PIMD) (2017)
- Estimating a structural bottle neck for eye–brain transfer of visual information from 3D-volumes of the optic nerve head from a commercial OCT device (2016)
- A Toolbox for Non-parametric Deformable Registration of Volume Images (2016)
- Signed Distance Fields for Modeling Surgical Guides and Plates from CT Images (2016)
- Holistic whole-body MRI image analysis (2016)
- Analysis of the variation in OCT measurements of a structural bottle neck for eye–brain transfer of visual information from 3D-volumes of the optic nerve head, PIMD-Average [0;2π] (2016)
- Interactive Deformation of Volume Images for Image Registration (2015)
- Fast evaluation of the robust stochastic watershed (2015)
- Exact evaluation of stochastic watersheds (2014)
- An interactive tool for deformable registration of volume images (2014)
- The Minimum Barrier Distance - Stability to seed point position (2014)
- Faster Fuzzy Connectedness via Precomputation (2013)
- Precise 3D Angle Measurements in CT Wrist Images (2013)
- Smart Paint (2012)
- Seeded Segmentation Based on Object Homogeneity (2012)
- Towards User-Guided Quantitative Evaluation of Wrist Fractures in CT Images (2012)
- Image Foresting Transform: On-the-fly Computation of Segmentation Boundaries (2011)
- Generalized Hard Constraints for Graph Segmentation (2011)
- Visualization and Haptics for Interactive Medical Image Analysis: Image Segmentation in Cranio-Maxillofacial Surgery Planning (2011)
- Relaxed Image Foresting Transforms for Interactive Volume Image Segmentation (2010)
- Sub-pixel Segmentation with the Image Foresting Transform (2009)
- Interactive Segmentation with Relaxed Image Foresting Transforms (2009)
- Binarization of Phase Contrast Volume Images of Fibrous Materials (2009)
- Segmentation and Visualization of 3D Medical Images through Haptic Rendering (2009)
- An Automated Image Analysis Method for Measuring Fibre Contact in Fibrous and Composite Materials (2008)
- Graph Cut Based Segmentation of Phase Contrast Volume Images of Fibrous Materials (2008)
- Minimal Cost-Path for Path-Based Distances (2007)
- Detailed quantification of the 3D structure of newsprints in X-ray synchrotron radiation microtomography images (2006)
- Stress transfer and failure in pulpfibre reinforced composites (2006)
- A 3D live-wire segmentation method for volume images using haptic interaction (2006)
- Damage Mechanisms in Paper (2006)
