Robin Strand
Professor at Institutionen för informationsteknologi; Vi3; Bildanalys
- Telephone:
- +46 18 471 34 69
- E-mail:
- robin.strand@it.uu.se
- Visiting address:
- Hus 10, Lägerhyddsvägen 1
- Postal address:
- Box 337
751 05 UPPSALA
Researcher at Institutionen för kirurgiska vetenskaper; Övriga; Radiologisk bildanalys
- Visiting address:
- Dag Hammarskjölds v 14 B Floor 2
75237 Uppsala - Postal address:
- Dag Hammarskjölds v 14 B Floor 2
75237 Uppsala
- Academic merits:
- Docent
- ORCID:
- 0000-0001-7764-1787
More information is available to staff who log in.
Short presentation
I am Head of Department of Dept. of Information Technology and Professor of Computerized Image Analysis. For information about my research, see my list of publications and CV, or simply contact me. See also my homepage.
Keywords
- discrete geometry
- image analysis
- image processing
- medical image analysis
Research
Publications
Selection of publications
- Voxel-wise Study of Cohort Associations in Whole-Body MRI (2020)
- Recent Advances in Large Scale Whole Body MRI Image Analysis – Imiomics (2020)
- The Minimum Barrier Distance (2017)
- A concept for holistic whole body MRI data analysis, Imiomics (2017)
- Digital topology and geometry in medical image processing (2015)
- The minimum barrier distance (2013)
- Distance Functions and Image Processing on Point-Lattices (2008)
Recent publications
- Deep learning segmentation of low-resolution images for prostate magnetic resonance-guided radiotherpy (2024)
- ASE-Net for Segmentation of Post-operative Glioblastoma and Patient-specific Fine-tuning for Segmentation Refinement of Follow-up MRI Scans (2024)
- Multi-level Residual Dual Attention Network for Major Cerebral Arteries Segmentation in MRA towards Diagnosis of Cerebrovascular Disorders (2024)
- Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors (2024)
- Automatic segmentation of large-scale CT image datasets for detailed body composition analysis. (2023)
All publications
Articles
- Deep learning segmentation of low-resolution images for prostate magnetic resonance-guided radiotherpy (2024)
- ASE-Net for Segmentation of Post-operative Glioblastoma and Patient-specific Fine-tuning for Segmentation Refinement of Follow-up MRI Scans (2024)
- Multi-level Residual Dual Attention Network for Major Cerebral Arteries Segmentation in MRA towards Diagnosis of Cerebrovascular Disorders (2024)
- Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors (2024)
- Automatic segmentation of large-scale CT image datasets for detailed body composition analysis. (2023)
- A whole-body diffusion MRI normal atlas (2023)
- Genetics of liver fat and volume associate with altered metabolism and whole body magnetic resonance imaging (2022)
- Efficient Parallel Thinning of 3d Objects on the Body-centered Cubic Lattice (2022)
- Patient specific deep learning based segmentation for magnetic resonance guided prostate radiotherapy (2022)
- An image registration method for voxel-wise analysis of whole-body oncological PET-CT (2022)
- MIMIR (2022)
- Serum levels of perfluoroalkyl substances (PFAS) and body composition - A cross-sectional study in a middle-aged population (2022)
- Improved geometric accuracy of whole body diffusion-weighted imaging at 1.5T and 3T using reverse polarity gradients (2022)
- Faster dense deformable image registration by utilizing both CPU and GPU (2021)
- Tissue-specific glucose partitioning and fat content in prediabetes and type 2 diabetes (2021)
- Intrafractional motion models based on principal components in Magnetic Resonance guided prostate radiotherapy (2021)
- Uncertainty-Aware Body Composition Analysis with Deep Regression Ensembles on UK Biobank MRI (2021)
- Relationships between carotid artery intima-media thickness and echogenicity and body composition using a new magnetic resonance imaging voxel-based technique (2021)
- Cardiovascular-related proteins and the abdominal visceral to subcutaneous adipose tissue ratio (2021)
- PET/MRI of glucose metabolic rate, lipid content and perfusion in human brown adipose tissue (2021)
- Relationships Between Plasma Levels And Six Proinflammatory Interleukins And Body Composition Using A New Magnetic Resonance Imaging Voxel-based Technique (2021)
- Adaptive Mathematical Morphology on Irregularly Sampled Signals in Two Dimensions (2020)
- Multiple comparison correction methods for whole-body magnetic resonance imaging (2020)
- Fast graph-cut based optimization for practical dense deformable registration of volume images (2020)
- Validation of automated whole-body analysis of metabolic and morphological parameters from an integrated FDG-PET/MRI acquisition (2020)
- Patient-specific fine-tuning of convolutional neural networks for follow-up lesion quantification (2020)
- Patient-specific fine-tuning of CNNs for follow-up lesion quantification (2020)
- Large-scale biometry with interpretable neural network regression on UK Biobank body MRI (2020)
- Kidney segmentation in neck-to-knee body MRI of 40,000 UK Biobank participants (2020)
- Voxel-wise Study of Cohort Associations in Whole-Body MRI (2020)
- Conventional analysis of movement on non-flat surfaces like the plasma membrane makes Brownian motion appear anomalous (2019)
- A robust multi-variability model based liver segmentation algorithm for CT-scan and MRI modalities (2019)
- Proof of principle study of a detailed whole-body image analysis technique, "Imiomics", regarding adipose and lean tissue distribution (2019)
- Relationship between endothelium-dependent vasodilation and fat distribution using the new "imiomics" image analysis technique (2019)
- Brown adipose tissue estimated with the magnetic resonance imaging fat fraction is associated with glucose metabolism in adolescents (2019)
- Average volume reference space for large scale registration of whole-body magnetic resonance images (2019)
- Region-by-region analysis of PET, MRI, and histology in en bloc-resected oligodendrogliomas reveals intra-tumoral heterogeneity (2019)
- A whole-body FDG PET/MR atlas for multiparametric voxel-based analysis (2019)
- Automatic detection of calving events from time-lapse imagery at Tunabreen, Svalbard (2019)
- Imiomics Using Whole-body FDG PET/MR in Staging and Treatment Response Evaluation of Non-Hodgkin Lymphoma Patients Treated With CAR-T Cells (2018)
- Distance Functions Based on Multiple Types of Weighted Steps Combined with Neighborhood Sequences (2018)
- Registration-based automated lesion detection and therapy evaluation of tumors in whole body PET-MR images (2017)
- Mathematical morphology on irregularly sampled data in one dimension (2017)
- Osteochondrosis, Synovial Fossae, and Articular Indentations in the Talus and Distal Tibia of Growing Domestic Pigs and Wild Boars (2017)
- Automated analysis of liver fat, muscle and adipose tissue distribution from CT suitable for large-scale studies. (2017)
- Automated segmentation of human cervical-supraclavicular adipose tissue in magnetic resonance images (2017)
- Exact Evaluation of Targeted Stochastic Watershed Cuts (2017)
- SmartPaint (2017)
- A concept for holistic whole body MRI data analysis, Imiomics (2017)
- A new method for reconstructing brain morphology (2016)
- Fuzzy Segmentation of Synthetic and MRI Volume Data sampled on Optimal Lattices (2016)
- LatticeLibrary and BccFccRaycaster (2016)
- Brain – Endocast relationship in the Australian lungfish, Neoceratodus forsteri, elucidated from tomographic data (Sarcopterygii: Dipnoi) (2015)
- A histopathological tool for quantification of biomarkers with sub-cellular resolution (2015)
- Magnetic resonance imaging cooling–reheating protocol indicates decreased fat fraction via lipid consumption in suspected brown adipose tissue (2015)
- Digital topology and geometry in medical image processing (2015)
- Efficient algorithm for finding the exact minimum barrier distance (2014)
- Multimodal histological image registration using locally rigid transforms (2014)
- Evaluation of prostate segmentation algorithms for MRI (2014)
- A Streaming Distance Transform Algorithm for Neighborhood-Sequence Distances (2014)
- Automated classification of immunostaining patterns in breast tissue from the Human Protein Atlas (2013)
- Minimal-delay distance transform for neighborhood-sequence distances in 2D and 3D (2013)
- Movement on Uneven Surfaces Displays Characteristic Features of Hop Diffusion (2013)
- The minimum barrier distance (2013)
- The Vectorial Minimum Barrier Distance (2012)
- Distance transform computation for digital distance functions (2012)
- Anti-aliased Euclidean distance transform (2011)
- Approximating Euclidean circles by neighbourhood sequences in a hexagonal grid (2011)
- Digital distance functions on three-dimensional grids (2011)
- Neighborhood Sequences in the Diamond Grid (2009)
- Weighted Distances Based on Neighborhood Sequences for Point-Lattices (2009)
- Path-Based Distance Functions in n-Dimensional Generalizations of the Face- and Body-Centered Cubic Grids (2009)
- Weighted distance transforms generalized to modules and their computation on point lattices (2007)
- Weighted distances based on neighbourhood sequences (2007)
- Distances based on neighbourhood sequences in non-standard three-dimensional grids (2007)
- Distance Transforms for Three-Dimensional Grids with Non-Cubic Voxels (2005)
- Estimating the Gradient for Images with Missing Samples Using Elliptical Structuring Elements
- Rotation-Equivariant Semantic Instance Segmentation
- Classification of Viruses in Transmission Electron Microscopy Images using Equivariant Neural Networks
- Deformable Image Registration of Volumetric Whole-body MRI: An Evaluation
- Faster dense deformable image registration by utilizing both CPU and GPU
- Deep learning-based dose prediction for magnetic resonance-guided prostate radiotherapy
- Pre-aliasing and anisotropy on the CC, BCC, and FCC sampling lattices
- Exploration of whole-body PET/MRI and clinical variables in type 2 diabetes for data-driven hypothesis generation
Books
- Mathematical Morphology and Its Applications to Signal and Image Processing (2013)
- Centre for Image Analysis Annual Report 2009 (2010)
- Distance Functions and Image Processing on Point-Lattices (2008)
Chapters
Conferences
- Lifelong Learning with Dynamic Convolutions for Glioma (2023)
- Deep Active Learning for Glioblastoma Quantification (2023)
- Lifelong Learning with Dynamic Convolutions for Glioma Segmentation from Multi-Modal MRI (2023)
- Deep Curriculum Learning for Follow-up MRI Registration in Glioblastoma (2023)
- Introducing Spatial Context in Patch-Based Deep Learning for Semantic Segmentation in Whole Body MRI (2023)
- 3-D Attention-SEV-Net for Segmentation of Post-operative Glioblastoma with Interactive Correction of Over-Segmentation (2023)
- Topology-Aware Learning for Volumetric Cerebrovascular Segmentation (2022)
- Rotation-Equivariant Semantic Instance Segmentation on Biomedical Images (2022)
- Rotation-Equivariant Semantic Instance Segmentation on Biomedical Images (2022)
- Segmentation of Major Cerebral Vessel from MRA images and Evaluation using U-Net Family (2022)
- Segmentation of Intracranial Aneurysm Remnant in MRA using Dual-Attention Atrous Net (2021)
- Replacing data augmentation with rotation-equivariant CNNs in image-based classification of oral cancer (2021)
- Effects of distance transform choice in training with boundary loss (2021)
- Large-scale inference of liver fat with neural networks on UK Biobank body MRI (2020)
- Large-scale Inference of Liver Fat with Neural Networks on UK Biobank Body MRI (2020)
- Recent Advances in Large Scale Whole Body MRI Image Analysis – Imiomics (2020)
- Mathematical Morphology on Irregularly Sampled Data Applied to Segmentation of 3D Point Clouds of Urban Scenes (2019)
- Segmentation of Post-operative Glioblastoma in MRI by U-Net with Patient-specific Interactive Refinement (2019)
- Optimization of max-norm objective functions in image processing and computer vision (2019)
- Distance Transform Based on Weight Sequences (2019)
- New Definition of Quality-Scale Robustness for Image Processing Algorithms, with Generalized Uncertainty Modeling, Applied to Denoising and Segmentation (2019)
- Interactive segmentation of glioblastoma for post-surgical treatment follow-up (2018)
- When Can lp-norm Objective Functions Be Minimized via Graph Cuts? (2018)
- Mathematical Morphology on Irregularly Sampled Signals (2017)
- The Boolean Map Distance (2017)
- The Minimum Barrier Distance (2017)
- A New Approach to Mathematical Morphology on One Dimensional Sampled Signals (2016)
- A Toolbox for Non-parametric Deformable Registration of Volume Images (2016)
- Minimal paths by sum of distance transforms (2016)
- Holistic whole-body MRI image analysis (2016)
- Calving events detection and quantification from time-lapse images in Tunabreen glacier (2015)
- Multimodal histological image registration using locally rigid transforms (2015)
- Interactive Deformation of Volume Images for Image Registration (2015)
- A Graph-Based Implementation of the Anti-Aliased Euclidean Distance Transform (2014)
- Anti-Aliased Euclidean Distance Transform on 3D Sampling Lattices (2014)
- An interactive tool for deformable registration of volume images (2014)
- The Minimum Barrier Distance - Stability to seed point position (2014)
- A Weight Sequence Distance Function (2013)
- Dual B-spline Snake for Interactive Myocardial Segmentation (2013)
- Faster Fuzzy Connectedness via Precomputation (2013)
- Digital Distances and Integer Sequences (2013)
- Automated classification of immunostaining patterns in breast tissue from the Human Protein Atlas (2012)
- Comparison of Restoration Quality on Square and Hexagonal Grids using Normalized Convolution (2012)
- Comparison of restoration quality on square and hexagonal grids using normalized convolution (2012)
- Aliasing Properties of Voxels in Three-Dimensional Sampling Lattices (2012)
- Smart Paint (2012)
- Seeded Segmentation Based on Object Homogeneity (2012)
- Generalized Hard Constraints for Graph Segmentation (2011)
- Path-Based Distance with Varying Weights andNeighborhood Sequences (2011)
- Sparse Object Representations by Digital Distance Functions (2011)
- A weighted neighbourhood sequence distance function with three local steps (2011)
- Sampling and Ideal Reconstruction on the 3D Diamond Grid (2010)
- Interpolation and Sampling on a Honeycomb Lattice (2010)
- Sampling and Aliasing Properties of Three-Dimensional Point-Lattices (2010)
- Digital Distance Functions on a Honeycomb Point Lattice (2010)
- On Maximal Balls in Three Volume Grids (2009)
- Neighborhood Sequences on nD Hexagonal/Face-Centered-Cubic Grids (2009)
- Neighborhood Sequences in the Diamond Grid - Algorithms with Four Neighbors (2009)
- Weighted Neighbourhood Sequences - Computing the Distance Transform (2008)
- Weighted Neighbourhood Sequences in Non-Standard Three-Dimensional Grids (2008)
- Weighted Neighborhood Sequences in Non-Standard Three-Dimensional Grids -- Parameter Optimization (2008)
- A Connection Between Zn and Generalized Triangular Grids (2008)
- The Polar Distance Transform by Fast-Marching (2008)
- Shape Representation wtih Maximal Path-Points for Path-Based Distances (2007)
- Weighted Distances Based on Neighbourhood Sequences in Non-Standard Three-Dimensional Grids (2007)
- Minimal Cost-Path for Path-Based Distances (2007)
- Topology Preserving Marching Cubes-like Algorithms on the Face-Centered Cubic Grid (2007)
- Weighted Distance Expression in Modules (2006)
- Approximating Euclidean Distance Using Distances based on Neighbourhood Sequences in Non-Standard Three-Dimensional Grids. (2006)
- Topology Preserving Digitization with FCC and BCC Grids (2006)
- Using the Hexagonal Grid for Three-Dimensional Images: Direct Fourier Method Reconstruction and Weighted Distance Transform. (2006)
- A Sequential Algorithm for Computing the Distance Transform using Distances Based on Neighbourhood Sequences in Z³. (2006)
- Generating Distance Maps with Neighbourhood Sequences (2006)
- An Approximation of the Maximal Inscribed Convex Set of a Digital Obj (2005)
- A Classification of Centres of Maximal Balls in Z^3 (2005)
- The Euclidean Distance Transform Applied to the FCC and BCC Grids (2005)
- Resolution Pyramids on the FCC and BCC Grids (2005)
- Supercover of Non-square and Non-cubic Grids (2004)
- Surface skeletons in grids with non-cubic voxels (2004)
- Weighted Distances on the FCC and BCC Grids (2004)
Reports
- Annual Report 2007 (2008)
- A High-Perpormance Parallel Thinning Approach Using a Non-Cubic Grid Structure. (2006)
- Weighted Distance Transforms Generalized To Modules and Their Computation on Point Lattices. (2006)
- Simple Points on the Body-Centered Cubic Grid (2006)
- Some Properties for Distances Based on Neighbourhood Sequences in the Face-Centered Cubic Grid and the Body-Centered Cubic Grid (2006)
- The face-centered cubic grid and the body-centered cubic grid (2005)
- Centre for Image Analysis Annual Report 2003 (2004)
- Detektion av slitna strömavtagare med hjälp av datoriserad bildanalys (2003)
