Cecilia Lindskog

Publikationer

Senaste publikationer

• Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors (2024)
• Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary (2024)
• The 2023 Report on the Proteome from the HUPO Human Proteome Project (2024)
• A human stomach cell type transcriptome atlas (2024)
• Expression of IDO1 and PD-L2 in Patients with Benign Lymphadenopathies and Association with Autoimmune Diseases (2023)

Alla publikationer

Artiklar

• Transcriptome Analysis Reveals Distinct Patterns Between the Invasive and Noninvasive Pituitary Neuroendocrine Tumors (2024)
• Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary (2024)
• The 2023 Report on the Proteome from the HUPO Human Proteome Project (2024)
• A human stomach cell type transcriptome atlas (2024)
• Expression of IDO1 and PD-L2 in Patients with Benign Lymphadenopathies and Association with Autoimmune Diseases (2023)
• The clinical value of proneural, classical and mesenchymal protein signatures in WHO 2021 adult-type diffuse lower-grade gliomas (2023)
• The human protein atlas-Integrated omics for single cell mapping of the human proteome (2023)
• Expression of cancer-testis antigens in the immune microenvironment of non-small cell lung cancer (2023)
• Sex- and Female Age-Dependent Differences in Gene Expression in Diffuse Large B-Cell Lymphoma-Possible Estrogen Effects (2023)
• Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms (2023)
• Inhibiting the glycerophosphodiesterase EDI3 in ER-HER2+breast cancer cells resistant to HER2-targeted therapy reduces viability and tumour growth (2023)
• Determinants of iFGF13-mediated regulation of myocardial voltage-gated sodium (Na_V) channels in mouse (2023)
• Spatial Proteomics for Further Exploration of Missing Proteins (2023)
• A Comparison of Host Responses to Infection with Wild-Type Avian Influenza Viruses in Chickens and Tufted Ducks (2023)
• Meningioma classification by immunohistochemistry (2023)
• The 2022 Report on the Human Proteome from the HUPO Human Proteome Project (2023)
• Proteogenomic analysis of acute myeloid leukemia associates relapsed disease with reprogrammed energy metabolism both in adults and children (2023)
• Outcome in PCNSL patients and its association with PD-L1+leukocytes in the tumor microenvironment (2022)
• Stemness and clinical features in relation to the subventricular zone in diffuse lower-grade glioma (2022)
• Genome-wide annotation of protein-coding genes in pig (2022)
• Protein Expression Profile of ACE2 in the Normal and COVID-19-Affected Human Brain. (2022)
• Genomic Multiple Sclerosis Risk Variants Modulate the Expression of the ANKRD55-IL6ST Gene Region in Immature Dendritic Cells (2022)
• A human adipose tissue cell-type transcriptome atlas (2022)
• Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction (2022)
• AGPAT1 as a Novel Colonic Biomarker for Discriminating Between Ulcerative Colitis With and Without Primary Sclerosing Cholangitis (2022)
• Endothelial cell heterogeneity and microglia regulons revealed by a pig cell landscape at single-cell level (2022)
• PD-L1 and IDO1 are potential targets for treatment in patients with primary diffuse large B-cell lymphoma of the CNS (2021)
• Infiltration of NK and plasma cells is associated with a distinct immune subset in non‐small cell lung cancer (2021)
• The Human Protein Atlas - Spatial localization of the human proteome in health and disease (2021)
• Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies (2021)
• Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro (2021)
• DeepHistoClass (2021)
• Combined RNA/tissue profiling identifies novel Cancer/testis genes (2021)
• A single-cell type transcriptomics map of human tissues (2021)
• Spatiotemporal dissection of the cell cycle with single-cell proteogenomics (2021)
• The prognostic impact of the tumour stroma fraction (2021)
• A Diffusion-like Process Accommodates New Crypts During Clonal Expansion in Human Colonic Epithelium (2021)
• Progress Identifying and Analyzing the Human Proteome (2021)
• Mechanistic insights into COVID-19 by global analysis of the SARS-CoV-2 3CL(pro) substrate degradome (2021)
• A high-stringency blueprint of the human proteome (2020)
• Candidate protein biomarkers in pancreatic neuroendocrine neoplasms grade 3 (2020)
• Systematic analysis reveals a functional role for STAMBPL1 in the epithelial-mesenchymal transition process across multiple carcinomas (2020)
• Somatostatin receptor expression and mTOR pathway activation in glioneuronal tumours of childhood (2020)
• The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty (2020)
• Proximity Ligation Assay as a Tool for Antibody Validation in Human Tissues (2020)
• ASCL1 promotes tumor progression through cell-autonomous signaling and immune modulation in a subset of lung adenocarcinoma (2020)
• Perivascular Neuropilin-1 expression is an independent marker of improved survival in renal cell carcinoma (2020)
• Tumor endothelial ELTD1 as a predictive marker for treatment of renal cancer patients with sunitinib (2020)
• The protein expression profile of ACE2 in human tissues (2020)
• Research on the Human Proteome Reaches a Major Milestone (2020)
• Marginal zone lymphoma expression of histidine-rich glycoprotein correlates with improved survival (2020)
• Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins (2020)
• An atlas of the protein-coding genes in the human, pig, and mouse brain (2020)
• TGFBR3L-An Uncharacterised Pituitary Specific Membrane Protein Detected in the Gonadotroph Cells in Non-Neoplastic and Tumour Tissue. (2020)
• Artificial intelligence for diagnosis and grading of prostate cancer in biopsies (2020)
• Prognostic Impact of Tumor Cell Programmed Death Ligand 1 Expression and Immune Cell Infiltration in NSCLC (2019)
• Programmed Cell Death Ligand 1 Immunohistochemistry (2019)
• Attachment Patterns of Human and Avian Influenza Viruses to Trachea and Colon of 26 Bird Species (2019)
• A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection (2019)
• Tumoral pyruvate kinase L/R as a predictive marker for the treatment of renal cancer patients with sunitinib and sorafenib (2019)
• Cell Type-Specific Expression of Testis Elevated Genes Based on Transcriptomics and Antibody-Based Proteomics (2019)
• The human secretome (2019)
• A genome-wide transcriptomic analysis of protein-coding genes in human blood cells (2019)
• PPP2R2A prostate cancer haploinsufficiency is associated with worse prognosis and a high vulnerability to B55 alpha/PP2A reconstitution that triggers centrosome destabilization (2019)
• Enhanced validation of antibodies for research applications (2018)
• Characterization of avian influenza virus attachment patterns to human and pig tissues (2018)
• The adult human testis transcriptional cell atlas (2018)
• An Integrative Analysis of Transcriptome and Epigenome Features of ASCL1-Positive Lung Adenocarcinomas (2018)
• VEGF receptor-2/neuropilin 1 trans-complex formation between endothelial and tumor cells is an independent predictor of pancreatic cancer survival (2018)
• Fixation and Spread of Somatic Mutations in Adult Human Colonic Epithelium (2018)
• Integration of Transcriptomics and Antibody-Based Proteomics for Exploration of Proteins Expressed in Specialized Tissues (2018)
• Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization (2018)
• The human protein atlas (2018)
• Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods (2017)
• A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family (2017)
• Chromatin and Single-Cell RNA- Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development (2017)
• A specific antibody to detect transcription factor T-Pit (2017)
• A subcellular map of the human proteome (2017)
• A pathology atlas of the human cancer transcriptome (2017)
• Profiling cancer testis antigens in non-small-cell lung cancer (2016)
• Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma (2016)
• Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma (2016)
• The Human Protein Atlas (2016)
• The Human Protein Atlas – an important resource for basic and clinical research (2016)
• A Systematic Characterization of Aquaporin-9 Expression in Human Normal and Pathological Tissues (2016)
• System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis (2016)
• Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy (2016)
• Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy (2016)
• Transcriptomics resources of human tissues and organs (2016)
• Looking for Missing Proteins in the Proteome of Human Spermatozoa (2016)
• The Identification of Therapeutic Targets in Lung Cancer Based on Transcriptomic and Proteomic Characterization of Cancer-Testis Antigens (2015)
• Proteomic Profiling Reveals Autoimmune Targets in Sarcoidosis (2015)
• The potential clinical impact of the tissue-based map of the human proteome (2015)
• Immunohistochemistry-based prognostic biomarkers in NSCLC (2015)
• The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling (2015)
• Tissue-based map of the human proteome (2015)
• The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling (2014)
• The human testis-specific proteome defined by transcriptomics and antibody-based profiling (2014)
• Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics (2014)
• The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling (2014)
• Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates (2014)
• Garbage in, garbage out (2014)
• European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye (2013)
• European H16N3 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye (2013)
• CD99 is a novel prognostic stromal marker in non-small cell lung cancer (2012)
• Novel pancreatic beta cell-specific proteins (2012)
• Novel antigen design for the generation of antibodies to G-protein-coupled receptors (2011)
• Antibody-based proteomics for discovery and exploration of proteins expressed in pancreatic islets (2010)
• A web-based tool for in silico biomarker discovery based on tissue-specific protein profiles in normal and cancer tissues (2008)
• Extending the immune phenotypes of lung cancer: Oasis in the desert
• Lead compound identification from first-in-class high affinity Affibody molecules binders towards DGCR2
• Targeting SOX2 in glioblastoma cells reveals heterogeneity in SOX2 dependency
• Somatostatin receptor expression, mTOR pathway activation and BRAFV600E mutational status in glioneuronal tumours of childhood
• H16 Gull Influenza Virus Attaches to the Human Respiratory Tract and Eye

Böcker

• Tissue Microarrays for Analysis of Expression Patterns (2013)

Kapitel

• Antibody Validation for Estrogen Receptor Beta (2022)
• The Human Protein Atlas and Antibody-Based Tissue Profiling in Clinical Proteomics (2022)

Konferenser

• Estimating Uncertainty in Deep Learning for Reporting Confidence (2020)